Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs79238704 | chr1:227441605 | A/G | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs79246828 | chr1:227508935 | T/C | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs7926022 | chr11:49793884 | G/A | 2.22E-5 | 175 | 15.4 | 15.72 | 0.4 | KM Plot |
| PAAD | rs7927417 | chr11:125562638 | T/A | 4.48E-5 | 177 | 16.05 | 11.6 | 4.1 | KM Plot |
| PAAD | rs7928365 | chr11:49790540 | T/A | 1.99E-5 | 176 | 15.4 | 15.67 | 0.4 | KM Plot |
| PAAD | rs7929466 | chr11:49764501 | C/T | 2.45E-5 | 174 | 15.4 | 15.43 | 0.4 | KM Plot |
| PAAD | rs7929513 | chr11:125584487 | C/T | 0.000108 | 178 | 16.08 | 14.37 | 5.03 | KM Plot |
| PAAD | rs79299974 | chr5:60350961 | A/G | 7.4E-5 | 176 | 15.3 | 16.15 | 4.68 | KM Plot |
| PAAD | rs7930031 | chr11:49764744 | G/A | 2.45E-5 | 174 | 15.4 | 15.43 | 0.4 | KM Plot |
| PAAD | rs7932585 | chr11:125590782 | A/G | 4.72E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs79326506 | chr11:125346919 | G/A | 1.9E-5 | 172 | 15.57 | 13.13 | 3.9 | KM Plot |
| PAAD | rs7932790 | chr11:125590845 | C/G | 0.000108 | 178 | 5.03 | 14.37 | 16.08 | KM Plot |
| PAAD | rs79386908 | chr6:27076668 | T/C | 1.41E-9 | 176 | 15.3 | 20.23 | 2.2 | KM Plot |
| PAAD | rs79392739 | chr1:227459572 | C/T | 3.22E-5 | 178 | 15.55 | 15.43 | 3.9 | KM Plot |
| PAAD | rs7939325 | chr11:125567555 | A/G | 8.02E-8 | 178 | 4.18 | 12.2 | 16.07 | KM Plot |